XCMS in R for windows will open cdf files generated on other instruments. Secondly, once we've done this, XCMS crashes when we open the Agilent cdf files ("The R for windows GUI has encountered a problem and has to close"). Firstly, it can only convert files with 8 or less letters in their name, although the newer versions of Chemstation, when using prefix+number file naming, will only produce filenames with 9 or more letters, so we have to change all the file names before the converter will work. Agilent's built-in converter is giving us nightmares. We'd like to use XCMS to process data, running in R for Windows. We use Agilent's Chemstation (LC-MS) and are currently on version B-03-01 SR1.
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